The neuropathology of chronic latent T gondii infection is quite different from acute cerebral toxoplasmosis, in which necrosis and inflammation are widespread; infecting organisms may be present outside of host cells; and multiple types of brain cells may harbor parasites.53–56 Most studies are in animal models, but a case report of incidental findings at autopsy of an immunocompetent patient indicated a similar pattern in humans.56 An early study of chronic latent infection in mice (examined at 3, 6, and 12 months post-infection) reported that infected brains appeared normal on gross inspection.57 Parasite-containing cysts were found primarily in gray matter (90%). Ultrastructural examination of 50 cysts established that all were contained within intact host cells, most of which were positively identified as neurons by presence of synapses. Cysts were present in all parts (dendrite, axon, soma) of neurons, some of which were severely distended by the presence of a large cyst (Figure 1). A study of latent congenital infection in mice also reported that all cysts were contained within intact host cells.58 In that study, all host cells were identified as neurons on the basis of immunohistochemical staining of neurofilament protein. Later studies have consistently reported that cysts were found only in neurons in animals with chronic infection, although astrocytic processes could be in close association.2,5,28 Studies that assessed cyst burden at two times after infection (1 month versus 2 months; 2 months versus 6 months) reported an overall decrease (approximately half in both studies) at the later time-point, indicating that some clearance of cysts can occur (Figure 2).2,5 Although both studies noted areas in which the burden of cysts did not decline, the areas were not the same. Several studies have quantified the relative burden of cysts across brain areas at various times post-infection (Figure 2). At 1–2 months post-infection, there is a general pattern of a higher burden of cysts in subcortical areas than in cerebral cortex or cerebellum.2,4,5,7 However, there were considerable differences across studies in the relative ranking of the most commonly involved structures (e.g., amygdala, hippocampus, hypothalamus, striatum, thalamus). At 4–6 months post-infection, the general pattern was a higher burden of cysts in areas of cerebral cortex than in subcortical areas.5,6 The significance of these findings is difficult to assess, as studies varied considerably in many aspects of methodology, and most also reported considerable individual differences. As noted in one study, the finding of major differences across individuals does not support the presence of preferential targeting of specific areas (e.g., amygdala), as has been suggested as the basis for the induced behavioral changes.6